Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues.
PNAS, 21(115), E4777-E4785.
Genome-wide Excision Repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns.
Nature Communications, 9(1), 1503.
Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome.
PNAS, 115(15), E3408-E3415.
Mfd translocase is necessary and sufficient for transcription-coupled repair in Escherichia coli.
The Journal of Biological Chemistry, 292(45), 18386-18391.
Molecular mechanism of DNA excision repair and excision repair maps of the human and E. coli genomes.
The Journal of Biological Chemistry, 292(38), 15588-15597.
Dynamic maps of UV damage formation and repair.
PNAS, 114(26), 6758-6763.
Human genome-wide repair map of DNA damage caused by the cigarette smoke carcinogen benzo[a]pyrene.
PNAS, 114(26), 6752-6757.
Class III histidine kinases: a recently accessorized kinase domain in putative modulators of type IV pili based motility.
Journal of Bacteriology, 199(18), e00218-17.
Genome-wide transcription-coupled repair in Escherichia coli is mediated by the Mfd translocase.
PNAS (Featured: From the Cover), 114(11), E2116-E2125.
Aquerium: a web application for comparative exploration of domain-based protein occurrences on the taxonomically clustered genome tree.
Proteins, 85(1), 72-77.
Cache domains are dominant extracellular sensors for signal transduction in prokaryotes.
PLOS Computational Biology , 12(4).
Establishing the precise evolutionary history of a gene improves predicting disease-causing missense mutations.
Genetics in Medicine, 18(10), 1029-1036.
CDvist: a webserver for identification and visualization of conserved domains in protein sequences.
Bioinformatics, 31(9), 1475–1477.